nip
prep bsam run
Running through this to extract raw from move_list and saving raw output df so some of these can run on the mini without moving the entire RDS dir.
finalize build_move
Hopefully this wraps up all the build_move runs.
add drifters
Got a subset of the drifter data from AOML and made sure to only get those that are drogued, for 2002-2019 (matching tag data), and global (for now).
Calculating geostrophic currents and eddy kinetic energy
Running some smoother and geostrophic calculation code in matlab as its way faster than anything I can come up with in R, including via various parallelization routines.
aws
Getting FSLE from Aviso for later extraction/animation
Getting AVISO FSLE data to then extract FSLE using shark locations and fit mpmm model (similar to Jonsen et al 2019 Ecology).
Calculating geostrophic currents and eddy kinetic energy
Running some smoother and geostrophic calculation code in matlab as its way faster than anything I can come up with in R, including via various parallelization routines.
markdown
Calculating geostrophic currents and eddy kinetic energy
Running some smoother and geostrophic calculation code in matlab as its way faster than anything I can come up with in R, including via various parallelization routines.
R code
Calculating geostrophic currents and eddy kinetic energy
Running some smoother and geostrophic calculation code in matlab as its way faster than anything I can come up with in R, including via various parallelization routines.
matlab
Calculating geostrophic currents and eddy kinetic energy
Running some smoother and geostrophic calculation code in matlab as its way faster than anything I can come up with in R, including via various parallelization routines.
ubuntu
Calculating geostrophic currents and eddy kinetic energy
Running some smoother and geostrophic calculation code in matlab as its way faster than anything I can come up with in R, including via various parallelization routines.
FSLE
Getting FSLE from Aviso for later extraction/animation
Getting AVISO FSLE data to then extract FSLE using shark locations and fit mpmm model (similar to Jonsen et al 2019 Ecology).
Lyapunov
Getting FSLE from Aviso for later extraction/animation
Getting AVISO FSLE data to then extract FSLE using shark locations and fit mpmm model (similar to Jonsen et al 2019 Ecology).
facet
Preparing tag data for FaCeT
Start w get raw eTUFF data